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Results 1-20 of 21

An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses [2019]

Santos, Tiago Benedito dos; Soares, João D. M.; Lima, Joni E.; Silva, Juliana C.; Ivamoto, Suzana T.; Baba, Viviane Y.; Souza, Silvia G. H.; Lorenzetti, Alan P. R.; Paschoal, Alexandre R.; Meda, Anderson R.; Nishiyama Junior, Milton Yutaka ; Oliveira, Ursula Castro de ; Mokochinski, João B.; Guyot, Romain; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Figueira, Antonio V. O.; Mazzafera, Paulo; Junior, Osvaldo R.; Vieira, Luiz G. E.; Pereira, Luiz F. P.; Domingues, Douglas S.
Funct Integr Genomics 2019 Jan;19(1):151-69

An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches [2018]

Diniz, Marcelo R. V.; Paiva, Ana L. B.; Guerra-Duarte, Clara; Nishiyama Junior, Milton Yutaka ; Mudadu, Mauricio A.; Oliveira, Ursula Castro de ; Borges, Marcia H.; Yates, John R.; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
PLoS One 2018 Aug;13(8):e0200628

Bothrops jararaca accessory venom gland is an ancillary source of toxins to the snake [2018]

Valente, Richard Hemmi; Luna, Milene Schmidt ; Oliveira, Ursula Castro de ; Nishiyama Junior, Milton Yutaka ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Portes Junior, José Antonio ; Clissa, Patricia Bianca ; Viana, Luciana Godoy ; Sanches, Leonardo ; Moura-da-Silva, Ana Maria ; Perales, Jonas Enrique Aguilar; Yamanouye, Norma
J Proteomics 2018 Apr;177:137-47

De novo assembly and annotation of Hyalomma dromedarii tick (Acari: Ixodidae) sialotranscriptome with regard to gender differences in gene expression [2018]

Bensaoud, Chaima; Nishiyama Junior, Milton Yutaka ; Ben Hamda, Cherif; Lichtenstein, Flavio ; Oliveira, Ursula Castro de ; Faria, Fernanda ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Ghedira, Kais; Bouattour, Ali; M'Ghirbi, Youmna; Chudzinski-Tavassi, Ana Marisa
Parasites Vectors 2018;11:314

HIV-1 genetic diversity and divergence and its correlation with disease progression among antiretroviral naïve recently infected individuals [2020]

Leda, Ana Rachel; Hunter, James; Oliveira, Ursula Castro de ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Kallas, Esper G.; Sucupira, Maria Cecilia Araripe; Diaz, Ricardo Sobhie
Virology 2020 Feb;541:13-24

Human chondrocyte activation by toxins from premolis semirufa, an Amazon rainforest moth caterpillar: identifying an osteoarthritis signature [2020]

Villas-Boas, Isadora Maria ; Pidde-Queiroz, Giselle ; Lichtenstein, Flavio ; Ching, Ana Tung Ching ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; De Ocesano-Pereira, Carlos ; Trufen, Carlos Eduardo Madureira ; Chudzinski-Tavassi, Ana Marisa ; Morais, Kátia Luciano Pereira ; Tambourgi, Denise Vilarinho
Front Immunol 2020;11:2191

Insights about minority HIV-1 strains in transmitted drug resistance mutation dynamics and disease progression [2018]

Leda, Ana Rachel; Hunter, James; Oliveira, Ursula Castro de ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Araripe Sucupira, Maria Cecilia; Diaz, Ricardo Sobhie
J Antimicrob Chemother 2018 Jul;73(7):1930-4

Integrative multiomics analysis of Premolis semirufa caterpillar venom in the search for molecules leading to a joint disease [2021]

Tambourgi, Denise Vilarinho ; Squaiella-Baptistão, Carla Cristina ; Villas-Boas, Isadora Maria ; Pidde-Queiroz, Giselle ; Paes-Leme, Adriana F.; Marques-Porto, Rafael ; Nishiyama Junior, Milton Yutaka ; Oliveira, Ursula Castro de ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
Sci Rep 2021 Jan;11:1995

MITGARD: an automated pipeline for mitochondrial genome assembly in eukaryotic species using RNA-seq data [2021]

Nachtigall, Pedro Gabriel ; Grazziotin, Felipe Gobbi ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
Brief Bioinform 2021 Jan;in press:1-15

Modulation of stress and immune response by Amblyomin-X results in tumor cell death in a horse melanoma model [2020]

Lichtenstein, Flavio ; Iqbal, Asif ; Will, Sonia Elisabete Alves de Lima ; Bosch, Rosemary Viola ; De Ocesano-Pereira, Carlos ; Goldfeder, Mauricio Barbugiani ; Chammas, Roger; Trufen, Carlos Eduardo Madureira ; Morais, Kátia Luciano Pereira ; Souza, Jean Gabriel de ; Natalino, Renato Jose Mendonça; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Nishiyama Junior, Milton Yutaka ; Oliveira, Ursula Castro de ; Alves, Francisco Ivanio Arruda ; Araujo, Jaqueline Mayara de ; Lobba, Aline Ramos Maia ; Chudzinski-Tavassi, Ana Marisa
Sci Rep 2020 Apr;10:6388

Molecular alterations in the extracellular matrix in the brains of newborns with congenital Zika syndrome [2020]

Aguiar, Renato S.; Pohl, Fabio; Morais, Guilherme L.; Nogueira, Fabio C. S.; Carvalho, Joseane B.; Guida, Letícia; Arge, Luis W. P.; Melo, Adriana; Moreira, Maria E. L.; Cunha, Daniela P.; Gomes, Leonardo; Portari, Elyzabeth A.; Velasquez, Erika; Melani, Rafael D.; Pezzuto, Paula; Castro, Fernanda L. de; Geddes, Victor E. V.; Gerber, Alexandra L.; de Azevedo, Girlene S.; Schamber-Reis, Bruno L.; Gonçalves, Alessandro L.; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Nishiyama Junior, Milton Yutaka ; Ho, Paulo Lee ; Schanoski, Alessandra Soares ; Schuch, Viviane; Tanuri, Amilcar; Chimelli, Leila; Vasconcelos, Zilton F. M.; Domont, Gilberto B.; Vasconcelos, Ana T. R.; Nakaya, Helder I.
Sci Signal 2020 Jun;13(635):eaay6736

Molecular mechanisms underlying intraspecific variation in snake venom [2018]

Amazonas, Diana Rêgo ; Portes Junior, José Antonio ; Nishiyama Junior, Milton Yutaka ; Nicolau, Carolina A.; Chalkidis, Hipocrates M.; Mourao, Rosa H., V; Grazziotin, Felipe Gobbi ; Rokyta, Darin R.; Valente, Richard H.; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Moura-da-Silva, Ana Maria ; Lisle Gibbs, H.
J Proteomics 2018 Jun;181:60-72

A multiomics approach unravels new toxins with possible in silico antimicrobial, antiviral, and antitumoral activities in the venom of Acanthoscurria rondoniae [2020]

Câmara, Guilherme A.; Nishiyama Junior, Milton Yutaka ; Kitano, Eduardo S.; Oliveira, Ursula Castro de ; Silva Junior, Pedro Ismael da ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Tashima, Alexandre Keiji
Front Pharmacol 2020 July;11:1075

Myriapod haemocyanin: the first three-dimensional reconstruction of Scolopendra subspinipes and preliminary structural analysis of S. viridicornis [2020]

Riciluca, Katie Cristina Takeuti ; Borges, A. C.; Mello, J. F. R.; Oliveira, Ursula Castro de ; Serdan, D. C.; Florez-Ariza, A.; Aguirre, Elisa Chaparro ; Nishiyama Junior, Milton Yutaka ; Cassago, A.; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Heel, M. van; Silva Junior, Pedro Ismael da ; Portugal, R. V.
Open Biol 2020 Apr;10(4):190258

Phylogenetically diverse diets favor more complex venoms in North American pitvipers [2021]

Holding, Matthew L.; Strickland, Jason L.; Rautsaw, Rhett M.; Hofmann, Erich P.; Mason, Andrew J.; Hogan, Michael P.; Nystrom, Gunnar S.; Ellsworth, Schyler A.; Colston, Timothy J.; Borja, Miguel; Castañeda-Gaytán, Gamaliel; Grünwald, Christoph I.; Jones, Jason M.; Freitas-de-Sousa, Luciana Aparecida ; Viala, Vincent Louis ; Margres, Mark J.; Hingst-Zaher, Erika ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Moura-da-Silva, Ana Maria ; Grazziotin, Felipe Gobbi ; Gibbs, H. Lisle; Rokyta, Darin R.; Parkinson, Christopher L.
Proc Natl Acad Sci U S A 2021 Apr;118(17):e2015579118

Proteomic endorsed transcriptomic profiles of venom glands from Tityus obscurus and T. serrulatus scorpions [2018]

Oliveira, Ursula Castro de ; Nishiyama Junior, Milton Yutaka ; Santos, Maria Beatriz Viana dos ; Silva, Andria de Paula Santos da ; Chalkidis, Hipocrates de Menezes; Souza-Imberg, Andreia ; Candido, Denise Maria ; Yamanouye, Norma ; Dorce, Valquiria Abrão Coronado ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
PLoS One 2018 Mar;13(3):e0193739

Replacement and parallel simplification of non-homologous proteinases maintain venom phenotypes in rear-fanged snakes [2020]

Bayona-Serrano, Juan David ; Viala, Vincent Louis ; Rautsaw, Rhett M; Schramer, Tristan D; Carvalho, Gesiele Almeida Barros de ; Nishiyama Junior, Milton Yutaka ; Freitas-de-Sousa, Luciana Aparecida ; Moura-da-Silva, Ana Maria ; Parkinson, Christopher L; Grazziotin, Felipe Gobbi ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
Mol. Biol. Evol. 2020 Jul;37(12):3563-3575

Size matters: an evaluation of the molecular basis of ontogenetic modifications in the composition of Bothrops jararacussu snake venom [2020]

Freitas-de-Sousa, Luciana Aparecida ; Nachtigall, Pedro Gabriel ; Portes Junior, José Antonio ; Holding, Matthew L.; Nystrom, Gunnar S.; Ellsworth, Schyler A.; Guimarães, Noranathan da Costa ; Tioyama, Emilly Campos ; Ortiz, Flora Roncolatto ; Silva, Bruno Rocha da ; Kunz, Tobias S. ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Grazziotin, Felipe Gobbi ; Rokyta, Darin R.; Moura-da-Silva, Ana Maria
Toxins 2020 Dec;12(12):791

Systems analysis of subjects acutely infected with the Chikungunya virus [2019]

Schanoski, Alessandra Soares ; Cruz, Natália Baptista; Castro-Jorge, Luíza Antunes de; Carvalho, Renan Villanova Homem de; Santos, Cliomar Alves dos; Rós, Nancy da ; Oliveira, Ursula Castro de ; Costa, Danuza Duarte; Santos, Cecília Luíza Simões dos; Cunha, Marielton dos Passos; Oliveira, Maria Leonor Sarno de ; Alves, Juliana Cardoso; Océa, Regina Adalva de Lucena Couto; Ribeiro, Danielle Rodrigues; Gonçalves, André Nicolau Aquime; Gonzalez-Dias, Patricia; Suhrbier, Andreas; Zanotto, Paolo Marinho de Andrade; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Zamboni, Dario S.; Almeida, Roque Pacheco; Ho, Paulo Lee ; Kalil, Jorge; Nishiyama Junior, Milton Yutaka ; Nakaya, Helder I.
PLoS Pathog 2019 Jun;15(6):e1007880

ToxCodAn: a new toxin annotator and guide to venom gland transcriptomics [2021]

Nachtigall, Pedro Gabriel ; Rautsaw, Rhett M; Ellsworth, Schyler A; Mason, Andrew J; Rokyta, Darin R; Parkinson, Christopher L; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
Brief Bioinform 2021 Apr;in press