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Results 1-18 of 18

44 Current Challenges in miRNomics [2021]

Akgül, Bünyamin; Stadler, Peter F.; Hawkins, Liam J.; Hadj-Moussa, Hanane; Storey, Kenneth B.; Ergin, Kemal; Çetinkaya, Rahmi; Paschoal, Alexandre R.; Nachtigall, Pedro Gabriel ; Tutar, Yusuf; Yousef, Malik; Allmer, Jens
Book chapter 2021 Aug; 2257:423-438

CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts [2021]

Nachtigall, Pedro Gabriel ; Kashiwabara, Andre Y; Durham, Alan M
Brief Bioinform 2021 May;22(3):1–11

A comparative analysis of heart microRNAs in vertebrates brings novel insights into the evolution of genetic regulatory networks [2021]

Nachtigall, Pedro Gabriel ; Bovolenta, Luiz A.; Patton, James G.; Fromm, Bastian; Lemke, Ney; Pinhal, Danillo
BMC Genomics 2021 Mar;22(153)

Comparing morphological and secretory aspects of cephalic glands among the New World coral snakes brings novel insights on their biological roles [2023]

Oliveira, Leonardo ; Nachtigall, Pedro Gabriel ; Vialla, Vincent Louis; Campos, Pollyanna Fernandes ; Costa-Neves, Adriana ; Zaher, Hussam; da Silva Jr., Nelson Jorge; Grazziotin, Felipe Gobbi ; Wilkinson, Mark; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
Toxicon

Computational detection of microRNA targets [2021]

Nachtigall, Pedro Gabriel ; Bovolenta, Luiz Augusto
Book chapter 2021 Aug; 2257:23

Differences in PLA2 constitution distinguish the venom of two endemic brazilian mountain lanceheads, Bothrops cotiara and Bothrops fonsecai [2022]

Nachtigall, Pedro Gabriel ; Freitas-de-Sousa, Luciana Aparecida ; Mason, Andrew J.; Moura-da-Silva, Ana Maria ; Grazziotin, Felipe Gobbi ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
Toxins 2022 Mar; 14(4):237

Highly conserved and extremely variable: the paradoxical pattern of toxin expression revealed by comparative venom-gland transcriptomics of Phalotris (Serpentes: Dipsadidae) [2024]

Entiauspe-Neto, Omar M.; Nachtigall, Pedro Gabriel ; Borges-Martins, Márcio; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Grazziotin, Felipe Gobbi
Toxicon 2024 Jun; 244;107740

Independent recruitment of different types of Phospholipases A2 to the venoms of Caenophidian snakes: the rise of PLA2-IIE within Pseudoboini (Dipsadidae) [2023]

Bayona-Serrano, Juan David; Grazziotin, Felipe Gobbi ; Salazar-Valenzuela, David; Valente, Richard H.; Nachtigall, Pedro Gabriel ; Colombini, Mônica ; Moura-da-Silva, Ana Maria ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
Mol Biol Evol 2023 Jul; 40(7):msad147

Independent Recruitment of Different Types of Phospholipases A2 to the Venoms of Caenophidian Snakes: The Rise of PLA2-IIE within Pseudoboini (Dipsadidae) [2023]

Bayona-Serrano, Juan David; Grazziotin, Felipe Gobbi ; Salazar-Valenzuela, David; Valente, Richard H.; Nachtigall, Pedro Gabriel ; Colombini, Mônica ; Moura-da-Silva, Ana Maria ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
Mol Biol Evol 2023 Jul; 40(7):msad147

Leptospirosis diagnosis among patients suspected of dengue fever in Brazil [2021]

Fornazari, Felipe; Richini-Pereira, Virgínia Bodelão; Joaquim, Sâmea Fernandes; Nachtigall, Pedro Gabriel ; Langoni, Helio
J Venom Anim Toxins Incl Trop Dis 2021 Mar;27:e20200118

MicroRNA roles in regeneration: multiple lessons from zebrafish [2021]

Ribeiro, Amanda Oliveira; Oliveira, Arthur Casulli de; Costa, Juliana Mara; Nachtigall, Pedro Gabriel ; Herkenhoff, Marcos Edgar; Campos, Vinicius Farias; Delella, Flávia Karina; Pinhal, Danillo
Dev Dyn 2021 Sept; 251(4):556-576

MITGARD: an automated pipeline for mitochondrial genome assembly in eukaryotic species using RNA-seq data [2021]

Nachtigall, Pedro Gabriel ; Grazziotin, Felipe Gobbi ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
Brief Bioinform 2021 Sept;22(5):1-15

Signatures of positive selection in the mitochondrial genome of neotropical freshwater stingrays provide clues about the transition from saltwater to freshwater environment [2022]

Nachtigall, Pedro Gabriel ; Loboda, T. S.; Pinhal, D.
Mol Genet Genomics 2022 Nov; 298:229-241

Size matters: an evaluation of the molecular basis of ontogenetic modifications in the composition of Bothrops jararacussu snake venom [2020]

Freitas-de-Sousa, Luciana Aparecida ; Nachtigall, Pedro Gabriel ; Portes Junior, José Antonio ; Holding, Matthew L.; Nystrom, Gunnar S.; Ellsworth, Schyler A.; Guimarães, Noranathan da Costa ; Tioyama, Emilly Campos ; Ortiz, Flora Roncolatto ; Silva, Bruno Rocha da ; Kunz, Tobias S. ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Grazziotin, Felipe Gobbi ; Rokyta, Darin R.; Moura-da-Silva, Ana Maria
Toxins 2020 Dec;12(12):791

The venom composition of the snake tribe Philodryadini: ‘Omic’ techniques reveal intergeneric variability among South American racers [2023]

Tioyama, Emilly Campos ; Bayona-Serrano, Juan David; Portes Junior, José Antonio ; Nachtigall, Pedro Gabriel ; Souza, Vinicius Carius de ; Beraldo Neto, Emidio ; Grazziotin, Felipe Gobbi ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles ; Moura-da-Silva, Ana Maria ; Freitas-de-Sousa, Luciana Aparecida
Toxins 2023 Jun; 15(7):415

ToxCodAn-Genome: an automated pipeline for toxin-gene annotation in genome assembly of venomous lineages [2024]

Nachtigall, Pedro Gabriel ; Durham, Alan M.; Rokyta, Darin R.; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
GigaScience 2024; 13:1-17

ToxCodAn: a new toxin annotator and guide to venom gland transcriptomics [2021]

Nachtigall, Pedro Gabriel ; Rautsaw, Rhett M; Ellsworth, Schyler A; Mason, Andrew J; Rokyta, Darin R; Parkinson, Christopher L; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
Brief Bioinform 2021 Apr;22(5):1–16

Tracking the recruitment and evolution of snake toxins using the evolutionary context provided by the Bothrops jararaca genome [2021]

Almeida, Diego Dantas; Viala, Vincent Louis; Nachtigall, Pedro Gabriel ; Broe, Michael; Gibbs, H. Lisle; Serrano, Solange Maria de Toledo ; Moura-da-Silva, Ana Maria ; Ho, Paulo Lee ; Nishiyama Junior, Milton Yutaka ; Junqueira-de-Azevedo, Inácio de Loiola Meirelles
Proc Natl Acad Sci U S A 2021 Apr;118(20):e2015159118